You can enable InnoDB by accessing your server via SSH as root ( or another account then use su or sudo to gain root access). Once that is done, check /etc/my.cnd for an entry like:
skip-inndob
If such an entry exists, remove or comment out the entry and restart MySQL.
If such an entry does not exist, then there are other problems for which we will need more information.
Once InnoDB is enabled, you can make it the default table type by specifying the following in /etc/my.cnf:
default-table-type=innodb
Enjoy:)
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